GetORF

EMBOSS GetORF: find and extract open reading frames (ORFs) in one or more nucleotide.

Enter sequence below in FASTA format to search.

Enter sequence below in FASTA format

>example
TACAGTAGCCGTTTTTAATCANCTACTCATCATGGCCAGAGTAGCAANAGCAGTAACAGTCATAGCAGCAGCAGTAGTAGCAGCGGCAGTAACAGCAGCAGCAGTAGCAGCAGAGCAGCAGCAGTAGCAGCAGTAGCAGCGACAGTAGTAACAGCAGCATTAACAGCTACAACAGCAGCAGTAGCCGCAACAGCAGTAGTAGTATTGGNAGCNNNNTGGCTCTGTTACCGTCACGTGTTCGNGGTCCTGNCCNAGCTCGTGGGATCCGGCCACCACCTCCCNCTCNGCAATCCATTGCTCCAGGTCNTCCACCTCCCGGTTNAGCTGGAAGAGGCGGTAGCGTTTCGTCCAGCTTCCCGCGNCGCTCCTCCGNCAGGTCCTTCAGGCCGGCGTACAGCTTGTCCACCTGGGACTGCCGCNTGNTGATTCGCTCACTGCGCGCNCAGGAANAGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGAGCACAAACCTCTCAGGATGTNCCTCGCCANCAGGCCTCTGGCCGGCCTCGGACAGCTGGGCGGACGTCTCCGCATAGTCCTCCACGGCCTGCTCCANGACCTGATGCTTCTTCAGCATGANCACGGCGCTCTGCTCATCCTGATCAACACCGTANNCTGAGGTCAGCTTGTGCGCCAAGAGGAANGTTTATGGACACGTNGTCGNACNTGAGCTTCTCACCTTGGCCTTCTCNTCTGACATCATGTAGAGCTCCTGCTCNCCCATCCAGGCCTCGGCTTCGGCTGCATCANTGTAGTACTGCTGGGCTTGTGNGCCTCACTNCAGGCGNTCGCGGCGCTTCGCTGTCTCNTCCCGCGGCCGGCCCACGGCTCCTGCAGCTCCNTCAGCCGCTGAAAGAAAAAAAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGCTGCGCTCNANNACGTCGTCGNCGCGAGGCTGGTGACCTTGGATCTCCTTCTGCAGCGTCTGNNAGGNNANAAGAGAAACTGGTTAGCANTGGTCACCAGTTAACGTGAGGCTGATCGGGTGATCACCGCTGACAGTNGTCACCTGGTTCTTCTTGATGAGCAGCTGGACNGTCTGAAGATTGTGNCCATGTTCAGTGGACGTTGCGANAGGCATCCTCTCCTCAACCCACAGCTGGTGGAAAGAAGAGC

Code to use

Standard

StandardStandard (with alternative initiation codons)Vertebrate MitochondrialYeast MitochondrialMold, Protozoan, Coelenterate Mitochondrial and Mycoplasma/SpiroplasmaInvertebrate MitochondrialCiliate Macronuclear and DasycladaceanEchinoderm MitochondrialEuplotid NuclearBacterialAlternative Yeast NuclearAscidian MitochondrialAscidian MitochondrialFlatworm MitochondrialBlepharisma MacronuclearChlorophycean MitochondrialTrematode MitochondrialScenedesmus obliquusThraustochytrium Mitochondrial

Minimum nucleotide size of ORF to report

Maximum nucleotide size of ORF to report

Type of output

Translation of regions between STOP codons

Translation of regions between STOP codonsTranslation of regions between START and STOP codonsNucleic sequences between STOP codonsNucleic sequences between START and STOP codonsNucleotides flanking START codonsNucleotides flanking initial STOP codonsNucleotides flanking ending STOP codons