BLAST

Blast (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA. It is more than a tool to view sequences aligned with each other or to calculate percent homology, but a program to locate regions of sequence similarity with a view to comparing structure and function.

Enter sequence below in FASTA format to search.

Enter sequence below in FASTA format

>example
CAGTGAGAGTAAAAAGTATTTGATCCCTTGCTGATTTTGTTGGTTTGTCCACTAATAAAGACATGATCATTCTATACTTTTAATGGTAGATGTATTCTAACATGGAGAGACAGAATATCAAAAAGAAAATCAAGAAAATAACTTTAAAGAATTTATTTTAATTTATTTGTTTTTCATTGAGGGAAATAAGTATTTGATCCCCTAGTATGCATTAGGAGTTCTGGCTTTCACAGACCAGTTAGACGCTCCCAAACAACTTGTTACCTGAATTGAAGACACCAGGTCTAACTAATCACCTGTATGTAAGACAACTGTTCACAGAATCAGACAATCAGACAGATTCCAAACTCTCCACCATGGGTAAGACCAAAGAACTCTCTCAGGACCTCAGAGACAGGATTGTTGACCTGCATAAATCGGGAATGGGCTACAAAAACATTAGCAAATTGCTGGGTATTAAAGTAACAACTATTGGTGCAATTGTGAGAAAATTTAAGAAGTATAACATGACCATCAATAGACCTCGGTCTGGTGCTCCACAGAAGATTTCACCTCGTGGGGTGGCAATGATCATGAGAACAGTGAGAAATCGGCCTGCAACCACACAGCAGGAGTTAGTGAATGACCTCCAGGCAGCTGGGACCAAAGTCACCAGGAAAACAATTGGCAACACTTTGCGCCGCAATGGATTAAAATCCTGCAGTGCCCGAAAGGTACCCCTGCTTAAGAAGGCACATGTGGAGGCTCGCCTAAAGTATGCCAATGATCACCTCAAAGATGCACAAAGTGATTGGGAGAAGGTTCTGTGGTCAGACGAGACCAAAATTGAACTATTTGGCCTAAACTCTACTCGTCATGTGTGGAGGAAGAAAAATGCTGCCTATGATCCCAGGAACACTGTGCCCACCGTCAAGCATGGAGGTGGAAACATTATGTTTTGGGGGTGTTTCTCTGCCAAGGGCACAGGGCTACTTCACCGCATCACTGGGAAGATGGACGGAGCCATGTACCGTGCAGTGCTGAGGGACAACCTCCTCCCCTCTGCTAGGAAGCTGAAAATGGGCCGTGGCTGGGTCTTCCAACATGACAACGACCCAAAGCATACAGCAAAGGCAACAAAGGAGTGGCTCAAGAAGAACCATATTAAGGTCATGGAGTGGCCCAGCCAGTCTCCGGACCTCAATCCAATTGAAAATCTATGGAGAGAGCTGAAGGTCCGAGTTGCCAAGCGACAGCCCACCAACCTTAATGATTTAGAGAGGATCTGCAAAGAAGAGTGGGCCAAAATTCCCCCTGATATGTGTGCTAACCTTGTGGTTAACTACAACAAACGTTTGACCGCTGTGCTTGCAAACAATGGCTTTGCCACCAAATATTAAGTGCTTTTGGATAGAGGGATCAAATACTTATTACCCTCAATGAAAAACAAATAAATTAAAATAAATTCTTTAAAGTTATTTTCTGGATTTTCTTTTTGATATTCTGTCTCTCCATGTTAGAATACATCTACCATTAAAAGTATAGAATGATCATGTCTTTATTAGTGGACAAACCAACAAAATCAGCAAGGGATCAAATACTTTTTACTCTCACTG

Program

The query sequence is filtered for low complexity regions by default.

filter

Low complexity

expect

alignments